rs30737944 SNP Detail

Summary

• ID
  rs30737944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72285829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAACATC TACGTGCAAA
  ACAAACAAAC AAACACCCAG CCGTATCAAT GTGAACATCA CTGAGGACCG AAGGCATGAG
  CAAGACTGTT AAGAGACAAT GTATAGACAG ATGGAGATGG CATCAGAATT GCTGAGAGGG
  GACAGGCAGC CAACGGGGGA CCGTGCTGCA TTGCCAGGGA AGCCAAGAGA GAAGGGTGTT
  Y
  GACTGATTGA AAGGCAGCTG AACCATCAGG CAGGGTGAGA GTTAGGCAGG GGATGTGGAA
  GTGTTCCAAA AAGGGGAGCA GGCATGGTGA GGCTTCCTAA GGTCAGAAGC CATTCTAGCG
  TGTTCTCCAG GCAGCAGGGA CCAGAGAGAG GATAAGGCCA GGGAAAGAGG CATGGGTGGA
  GGTAATCCAG GAGTGAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978478	NES11923003	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30737944					SNP	T	T	C	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978478	NES11923003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72285829 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	356 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57090	transcription start site region 57090	1980 bp downstream
Tssr57091	transcription start site region 57091	1918 bp downstream
Tssr57092	transcription start site region 57092	1633 bp downstream
Tssr57097	transcription start site region 57097	1638 bp upstream
Tssr57098	transcription start site region 57098	1778 bp upstream
Tssr57099	transcription start site region 57099	1862 bp upstream
Tssr61420	transcription start site region 61420	1921 bp downstream