rs30737100 SNP Detail

Summary

• ID
  rs30737100
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72285731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAATAA ATCTTTAGAA
  AATAATTAGG TAGGGAGTGA AGTGACTAAG GAAGACACTC AATCTTGGCT CTGGCCTCCA
  CACACATGTG CACATGAACT TAAACATCTA CGTGCAAAAC AAACAAACAA ACACCCAGCC
  GTATCAATGT GAACATCACT GAGGACCGAA GGCATGAGCA AGACTGTTAA GAGACAATGT
  W
  TAGACAGATG GAGATGGCAT CAGAATTGCT GAGAGGGGAC AGGCAGCCAA CGGGGGACCG
  TGCTGCATTG CCAGGGAAGC CAAGAGAGAA GGGTGTTTGA CTGATTGAAA GGCAGCTGAA
  CCATCAGGCA GGGTGAGAGT TAGGCAGGGG ATGTGGAAGT GTTCCAAAAA GGGGAGCAGG
  CATGGTGAGG CTTCCTAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978474	NES11923001	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A	T	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30737100					SNP	A	A	T	A	A	A	A	A	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978474	NES11923001	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72285731 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	258 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57089	transcription start site region 57089	1957 bp downstream
Tssr57090	transcription start site region 57090	1882 bp downstream
Tssr57091	transcription start site region 57091	1820 bp downstream
Tssr57092	transcription start site region 57092	1535 bp downstream
Tssr57097	transcription start site region 57097	1736 bp upstream
Tssr57098	transcription start site region 57098	1876 bp upstream
Tssr57099	transcription start site region 57099	1960 bp upstream