rs30737098 SNP Detail

Summary

• ID
  rs30737098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72285627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC TCCACACACA TGTGCACATG
  W
  ACTTAAACAT CTACGTGCAA AACAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45984353	mCV25198408	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		T
ss47978472	NES11922998	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	A	T		T	T	A	T		T	A	T		A
ss133283811	ENSMUSSNP2458107	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
ss321821421	CHEV_6_72258637	CHEVERUD	SCREENING_POP	f	SNP													T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30737098					SNP	A	A	A	T	A	A	T	A	T	T	A	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978472	NES11922998	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72285627 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	154 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57089	transcription start site region 57089	1853 bp downstream
Tssr57090	transcription start site region 57090	1778 bp downstream
Tssr57091	transcription start site region 57091	1716 bp downstream
Tssr57092	transcription start site region 57092	1431 bp downstream
Tssr57097	transcription start site region 57097	1840 bp upstream
Tssr57098	transcription start site region 57098	1980 bp upstream