rs30736720 SNP Detail

Summary

• ID
  rs30736720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72377167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCACGG GTTCTTATTT
  TTTGTTTTCT GTATAGGGAT GTTCTGCCTG CTGGGCCACA GTTTGATAGT AATTGCAAGA
  CCCATCTCTT ATACATCTGT AGCTTCCAAA GTGACATGGC CTGCCTTGCC TGTTAGGATA
  ACCTAGCAGT GGACATGTCC TCAACAGCAG GAGCACTATT GGCCTAGTGA TTCCAGCTGC
  Y
  AAACACATCT GGCCCCAGTG ACCCCTGCTT TTATGTCTAC ATCTGCCGGC AGTGGAGCTC
  AGTGTGCCTC AGAACTCCTA CAGACTTCAA GGACAGCAGC TACAATAACA TTGAGATATT
  TGCCCTTTTA GCCATGTTGA TATTTGCACT AAAGCTGGCA ACTTAGTGGG AGGGAAGAGG
  GAGGTGAGAA GCCAAACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47979430	NES11919364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736720					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979430	NES11919364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72377167 () rs orientation: forward

Symbol	Name	Function Class
Rr399702	regulatory region 399702	1690 bp upstream
Rr632172	regulatory region 632172	1714 bp proximal
Rr632173	regulatory region 632173	1827 bp proximal