rs30736718 SNP Detail

Summary

• ID
  rs30736718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72377142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACAAGC TGCACAGACT
  CTCTCTGAGC CACGGGTTCT TATTTTTTGT TTTCTGTATA GGGATGTTCT GCCTGCTGGG
  CCACAGTTTG ATAGTAATTG CAAGACCCAT CTCTTATACA TCTGTAGCTT CCAAAGTGAC
  ATGGCCTGCC TTGCCTGTTA GGATAACCTA GCAGTGGACA TGTCCTCAAC AGCAGGAGCA
  Y
  TATTGGCCTA GTGATTCCAG CTGCTAAACA CATCTGGCCC CAGTGACCCC TGCTTTTATG
  TCTACATCTG CCGGCAGTGG AGCTCAGTGT GCCTCAGAAC TCCTACAGAC TTCAAGGACA
  GCAGCTACAA TAACATTGAG ATATTTGCCC TTTTAGCCAT GTTGATATTT GCACTAAAGC
  TGGCAACTTA GTGGGAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47979428	NES11919363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736718					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979428	NES11919363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72377142 () rs orientation: forward

Symbol	Name	Function Class
Rr399702	regulatory region 399702	1715 bp upstream
Rr632172	regulatory region 632172	1739 bp proximal
Rr632173	regulatory region 632173	1852 bp proximal