rs30736639 SNP Detail

Summary

• ID
  rs30736639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132799188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTGGCA AGAATGAGAA
  AGCCAGGGAA AGAGAGGTCC AATACCAACT TAAATGTAAA AATACAAAGT ATCCCTCTTG
  TATTCACCTG ATCTTAAAAT AGGGGAGAGT AGCTAGAGCT AGAAGGGGAC TTGGAAAAGG
  GAAGCTGGAC TTAAAACTGA CTTGGAGAAA TAAAGAGTCA AGAGGCTGCA AGAGGTCCTG
  Y
  TCAGTAGGAA AATGTAATTG TTCTTTCTGG AAAGATGGGA AGTGAGTTGA CCAAACAAGC
  ATGAGAATGC TAAGTGTGAA GCATGCTAGA TAGGACTAAT AACCTGGAAG AGAATATGGT
  ATTTCTTTCA GTGGCACTTG TTTGGGTGTA GACGGGAGAA GATGCCAAAT AGAAGCATGT
  CTACACAGTA GGTAAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46979574	NES10879148	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736639					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979574	NES10879148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132799188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13847	CpG island 13847	1105 bp distal
Gstcd	glutathione S-transferase, C-terminal domain containing	1394 bp upstream
Ints12	integrator complex subunit 12	Intron
Rr398029	regulatory region 398029	1369 bp downstream
Rr398030	regulatory region 398030	101 bp downstream
Rr585500	regulatory region 585500	1613 bp distal
Rr585501	regulatory region 585501	1577 bp distal
Rr585502	regulatory region 585502	1405 bp distal
Rr585503	regulatory region 585503	904 bp distal
Rr585504	regulatory region 585504	206 bp distal
Rr585505	regulatory region 585505	934 bp proximal
Tssr31768	transcription start site region 31768	1585 bp downstream
Tssr31769	transcription start site region 31769	1554 bp downstream
Tssr31770	transcription start site region 31770	1520 bp downstream
Tssr31771	transcription start site region 31771	1474 bp downstream
Tssr31772	transcription start site region 31772	816 bp downstream
Tssr35744	transcription start site region 35744	1665 bp upstream
Tssr35745	transcription start site region 35745	1644 bp upstream
Tssr35746	transcription start site region 35746	1580 bp upstream
Tssr35747	transcription start site region 35747	1388 bp upstream
Tssr35748	transcription start site region 35748	1373 bp upstream
Tssr35749	transcription start site region 35749	1033 bp upstream