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rs30736547 SNP Detail
Summary
  • ID
    rs30736547
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:72244925 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTGCTCTT CTTCGAGTCT
    CTGAAACCCC TGGTCAGTTC TTGGTCCTAC CAAACCCTTA AGAAGATGCA CTATAGCAGC
    CTTTGGTCCA GTATGGGAGA CAAGTTTCAA CAAAAAGGCA CCATTGGAAA TCTCAGAGCT
    ACTCAAGGGA CAGAATGCAG CAGTTCATCA TAGCCCCCTC AGCTATTCAC TGAGAACTTA
    Y
    AATGACACAG TTTCATTAGA CATGTACCTA CGATTCATCT TCAAAGCATC CCAGTAGGGT
    TATGTCACGC TAGACAACTC CCCATGGACC CTCAGCTCAC AACACCCCTT CTCAGGCTCA
    TCCTCCAACA CGGAGGGGAT GCTTAAGGTT TATGGGTTGA AGACAACAGA AGCAACTCTA
    GCTGGAGGAG AAGTGGTTCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47977992 NES11926319 PERLEGEN MM_PANEL2 f SNP T T T T C T T C C T C T
SNP Consensus Information
SNP Consensus Type
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30736547 SNP T T T T C T T C C T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47977992 NES11926319 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:72244925 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr632115 regulatory region 632115 1959 bp distal
Rr632116 regulatory region 632116 471 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory