rs30736545 SNP Detail

Summary

• ID
  rs30736545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72244812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAGGCT CTTGAAGGCA
  GGTACCATGA CAGTAAGGGA GGTGACAATT TTTGTAATGA TTCAAAGAAT CTAAGATTTA
  TGCCTGTGTC TGCTTTGCCA TCCCCAACGT GGCTTCTGCT CTTCTTCGAG TCTCTGAAAC
  CCCTGGTCAG TTCTTGGTCC TACCAAACCC TTAAGAAGAT GCACTATAGC AGCCTTTGGT
  Y
  CAGTATGGGA GACAAGTTTC AACAAAAAGG CACCATTGGA AATCTCAGAG CTACTCAAGG
  GACAGAATGC AGCAGTTCAT CATAGCCCCC TCAGCTATTC ACTGAGAACT TATAATGACA
  CAGTTTCATT AGACATGTAC CTACGATTCA TCTTCAAAGC ATCCCAGTAG GGTTATGTCA
  CGCTAGACAA CTCCCCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47977990	NES11926317	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30736545					SNP	C	C	T	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47977990	NES11926317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72244812 () rs orientation: forward

Symbol	Name	Function Class
Rr632115	regulatory region 632115	1846 bp distal
Rr632116	regulatory region 632116	358 bp distal