rs30735917 SNP Detail

Summary

• ID
  rs30735917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGACAAGC TGGTCCTCCC
  TGTGCTGCCA GGAGCCCTCT TGGCAAGGCC TGGGCCTCAC ACTCAGGTAA GCCAGTCCAT
  TCCCAGCAGC TGCTGGGAAT CCAGAAGGCT AGCATGGCCG CTGAGACGCG TGGGCACCCA
  GAGAGGCTGA GCTCAAACTA GGAGGCAGAG ATGGCAAGGT CAGGCAAGGT CACACAACCG
  M
  GGTAGCTCCC AGCCTAACCA CACTTCACCG CTTCCTTCCT CAGGACTTCT CTGAGCAACA
  GCTCCCCATT CCCCTGCCCT TCTGCTGGCT TTGCAGAACT CTGATCAAGC GGGTTCAAGC
  CGTGATCCCC AAGGTAAGGA CCACACAGAG CTCAGAGGGG CCCCCAATAG CTGCACCTTC
  CTCCACCTCA ACACTCCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47978458	NES11923117	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30735917					SNP	A	A	C	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978458	NES11923117	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284094 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	1358 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57084	transcription start site region 57084	1450 bp downstream
Tssr57085	transcription start site region 57085	1213 bp downstream
Tssr57086	transcription start site region 57086	1168 bp downstream
Tssr57087	transcription start site region 57087	1133 bp downstream
Tssr57088	transcription start site region 57088	1081 bp downstream
Tssr57089	transcription start site region 57089	320 bp downstream
Tssr57090	transcription start site region 57090	245 bp downstream
Tssr57091	transcription start site region 57091	183 bp downstream
Tssr57092	transcription start site region 57092	28 bp upstream