rs30735845 SNP Detail

Summary

• ID
  rs30735845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154276779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGATTAT GCGGGCGAGC
  CAGATCTTAC TTGAGCTCCA TCTAGCAGCT AGTAGCAAGG AGGTAAGTCA TCGCCGGTTT
  CTCAACATTT GATCGCACAT GTTTACAGGA AGGGCAGAGC TTCTAACCAG TCTCCCCTCC
  CAGTCTCTCT TAGCTGATTT CCACTTTCAC ACAGCCAAGC CACAACCGTT GTCTTACACT
  Y
  TAGCTGTGAT GTACTTGGAA CAATCTTTGC TCTACTGAGT TGAAAGGGTC CTATTGACAC
  TTCAGCTTTA GAATCTCAGA GAAAACCAGT GTTGCAAAGA CCCTCGAAAC GGAGATATCA
  GAAATTCCCT GGAGGGTCTG GAAGGACGCT GAGTTAACAG TGAGGGCTGC ATGCACAGCC
  AGAGTTTGCT CTTTAGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47479157	NES10333297	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735845					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479157	NES10333297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154276779 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	655 bp distal
Rr587867	regulatory region 587867	within coordinates
Rr587868	regulatory region 587868	1124 bp proximal
Rr587869	regulatory region 587869	1365 bp proximal
Rr587870	regulatory region 587870	1533 bp proximal