rs30735447 SNP Detail

Summary

• ID
  rs30735447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72243252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGTGG AGGTAAGGCT
  TGTGCTCCAT CCCCAGTCTT CTAGTTTGGT ATGTAGTTGA ATGGTCTCAT CACTGTGCTG
  GTGAAGTCCC TGCAGTGCCC TCTGGGAGAG CGGACTTGGT AAGAACTCCG TTCACCCCTG
  ATGAAGCATC CCGCTCCCAC CAGAGCTAGA GGTGAGCTGT AGTAAGCACC CGCCTTCTAA
  Y
  TAAGACCTGC TGCAAATTCA CTGTGGCCCA ATGACAGTGC AGCCAATGAT GTTGCAAGGC
  TTGCTGGTGA CACTTCCTAA GGACTTCTGT GAGGAAGATC TTAAACCCCC CGAAACTCCT
  GCTTCCGCCT CCTAAGTCCT AGCATGCACC TGGCTCAATA ACAGTTTGCT TTCTAAAAAT
  TTCCCACACT TTCCCACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47977980	NES11926394	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735447					SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47977980	NES11926394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72243252 () rs orientation: forward

Symbol	Name	Function Class
Rr632114	regulatory region 632114	1999 bp distal
Rr632115	regulatory region 632115	286 bp distal
Rr632116	regulatory region 632116	1181 bp proximal