rs30735445 SNP Detail

Summary

• ID
  rs30735445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72243046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGATGAA GGCACAGCCC
  AGGGAAGCCG CCAGGCACTT ACCATAGCTA TATTCGTGAT GTCCACTGTC TCAGCTAGCC
  ACTCTACCCA GATATAGAAG AGACAGGTCC CAGGGAATGT AGCCCAGCAC TACCCCCTCC
  CGCAACAGAT CTTACTACAT ACCCAAGCCA GCCTAGAGTC TGCTGTGTAG ACCAGGCTGG
  Y
  TTCTATCTGG TGTGGAGGTA AGGCTTGTGC TCCATCCCCA GTCTTCTAGT TTGGTATGTA
  GTTGAATGGT CTCATCACTG TGCTGGTGAA GTCCCTGCAG TGCCCTCTGG GAGAGCGGAC
  TTGGTAAGAA CTCCGTTCAC CCCTGATGAA GCATCCCGCT CCCACCAGAG CTAGAGGTGA
  GCTGTAGTAA GCACCCGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47977978	NES11926393	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30735445					SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47977978	NES11926393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72243046 () rs orientation: forward

Symbol	Name	Function Class
Rr632114	regulatory region 632114	1793 bp distal
Rr632115	regulatory region 632115	80 bp distal
Rr632116	regulatory region 632116	1387 bp proximal