rs30735093 SNP Detail

Summary

• ID
  rs30735093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCTGTGC CCACGTGGGC
  AGGCTAAGCC AGAACAGAAT CCAGGGATGC CGGATGCCGT TCCAAACCCT CTGCTGGACA
  AGCTGGTCCT CCCTGTGCTG CCAGGAGCCC TCTTGGCAAG GCCTGGGCCT CACACTCAGG
  TAAGCCAGTC CATTCCCAGC AGCTGCTGGG AATCCAGAAG GCTAGCATGG CCGCTGAGAC
  R
  CGTGGGCACC CAGAGAGGCT GAGCTCAAAC TAGGAGGCAG AGATGGCAAG GTCAGGCAAG
  GTCACACAAC CGAGGTAGCT CCCAGCCTAA CCACACTTCA CCGCTTCCTT CCTCAGGACT
  TCTCTGAGCA ACAGCTCCCC ATTCCCCTGC CCTTCTGCTG GCTTTGCAGA ACTCTGATCA
  AGCGGGTTCA AGCCGTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978454	NES11923115	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30735093					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978454	NES11923115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284021 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	1431 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57082	transcription start site region 57082	1990 bp downstream
Tssr57083	transcription start site region 57083	1949 bp downstream
Tssr57084	transcription start site region 57084	1377 bp downstream
Tssr57085	transcription start site region 57085	1140 bp downstream
Tssr57086	transcription start site region 57086	1095 bp downstream
Tssr57087	transcription start site region 57087	1060 bp downstream
Tssr57088	transcription start site region 57088	1008 bp downstream
Tssr57089	transcription start site region 57089	247 bp downstream
Tssr57090	transcription start site region 57090	172 bp downstream
Tssr57091	transcription start site region 57091	110 bp downstream
Tssr57092	transcription start site region 57092	101 bp upstream