rs30735091 SNP Detail

Summary

• ID
  rs30735091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72283956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTACCC TAAAACCCCT
  CACCTGTTCC ATGCCCTAGA ACCCCAAAGC CATCTGCAAT CATGTGGGCC TGTGCCCACG
  TGGGCAGGCT AAGCCAGAAC AGAATCCAGG GATGCCGGAT GCCGTTCCAA ACCCTCTGCT
  GGACAAGCTG GTCCTCCCTG TGCTGCCAGG AGCCCTCTTG GCAAGGCCTG GGCCTCACAC
  Y
  CAGGTAAGCC AGTCCATTCC CAGCAGCTGC TGGGAATCCA GAAGGCTAGC ATGGCCGCTG
  AGACGCGTGG GCACCCAGAG AGGCTGAGCT CAAACTAGGA GGCAGAGATG GCAAGGTCAG
  GCAAGGTCAC ACAACCGAGG TAGCTCCCAG CCTAACCACA CTTCACCGCT TCCTTCCTCA
  GGACTTCTCT GAGCAACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47978452	NES11923114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30735091					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978452	NES11923114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72283956 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	1496 bp proximal
Sftpb	surfactant associated protein B	Coding-Synonymous
Tssr57082	transcription start site region 57082	1925 bp downstream
Tssr57083	transcription start site region 57083	1884 bp downstream
Tssr57084	transcription start site region 57084	1312 bp downstream
Tssr57085	transcription start site region 57085	1075 bp downstream
Tssr57086	transcription start site region 57086	1030 bp downstream
Tssr57087	transcription start site region 57087	995 bp downstream
Tssr57088	transcription start site region 57088	943 bp downstream
Tssr57089	transcription start site region 57089	182 bp downstream
Tssr57090	transcription start site region 57090	107 bp downstream
Tssr57091	transcription start site region 57091	45 bp downstream
Tssr57092	transcription start site region 57092	166 bp upstream