rs30735089 SNP Detail

Summary

• ID
  rs30735089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72283941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGAGGG GTTCCCTCCT
  TACCCTAAAA CCCCTCACCT GTTCCATGCC CTAGAACCCC AAAGCCATCT GCAATCATGT
  GGGCCTGTGC CCACGTGGGC AGGCTAAGCC AGAACAGAAT CCAGGGATGC CGGATGCCGT
  TCCAAACCCT CTGCTGGACA AGCTGGTCCT CCCTGTGCTG CCAGGAGCCC TCTTGGCAAG
  R
  CCTGGGCCTC ACACTCAGGT AAGCCAGTCC ATTCCCAGCA GCTGCTGGGA ATCCAGAAGG
  CTAGCATGGC CGCTGAGACG CGTGGGCACC CAGAGAGGCT GAGCTCAAAC TAGGAGGCAG
  AGATGGCAAG GTCAGGCAAG GTCACACAAC CGAGGTAGCT CCCAGCCTAA CCACACTTCA
  CCGCTTCCTT CCTCAGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47978450	NES11923113	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs30735089					SNP	G	A	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978450	NES11923113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72283941 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	1511 bp proximal
Sftpb	surfactant associated protein B	Coding-Synonymous
Tssr57082	transcription start site region 57082	1910 bp downstream
Tssr57083	transcription start site region 57083	1869 bp downstream
Tssr57084	transcription start site region 57084	1297 bp downstream
Tssr57085	transcription start site region 57085	1060 bp downstream
Tssr57086	transcription start site region 57086	1015 bp downstream
Tssr57087	transcription start site region 57087	980 bp downstream
Tssr57088	transcription start site region 57088	928 bp downstream
Tssr57089	transcription start site region 57089	167 bp downstream
Tssr57090	transcription start site region 57090	92 bp downstream
Tssr57091	transcription start site region 57091	30 bp downstream
Tssr57092	transcription start site region 57092	181 bp upstream