rs30735085 SNP Detail

Summary

• ID
  rs30735085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72283648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CATCTCTGTC TTTGTCCCTT
  Y
  CATAGTGTCC TAAGATGCAG TACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47978446	NES11923111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C	C		C	C	C		T
ss321821411	CHEV_6_72256658	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30735085					SNP	C	C	C	C	C	T	C	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978446	NES11923111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72283648 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	1804 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57082	transcription start site region 57082	1617 bp downstream
Tssr57083	transcription start site region 57083	1576 bp downstream
Tssr57084	transcription start site region 57084	1004 bp downstream
Tssr57085	transcription start site region 57085	767 bp downstream
Tssr57086	transcription start site region 57086	722 bp downstream
Tssr57087	transcription start site region 57087	687 bp downstream
Tssr57088	transcription start site region 57088	635 bp downstream
Tssr57089	transcription start site region 57089	117 bp upstream
Tssr57090	transcription start site region 57090	170 bp upstream
Tssr57091	transcription start site region 57091	244 bp upstream
Tssr57092	transcription start site region 57092	474 bp upstream