rs30734959 SNP Detail

Summary

• ID
  rs30734959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72360285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGATGGA GAGGGGCTGT
  TTGGTACTTT CCCTGCCCTC TGTGGAATCG AGAGCATGAT CCAAAATCTG GCCTGTATTT
  AGTATCCCAC ATTTTTGACT CTCAACCCAT CCCTTTCCTC ACATGCTCCC AACAACAGGT
  TGTTTCTAAT TCTGGAAAGG TTGTGTAGGA ACCAAGGACA GAGGAAGCCA AGAACCACAA
  R
  CCAAGGCAGA CTGGGCTCTG GAAAGAACCG CAGTGATGAA GAACCTGGTG GGAAGGAGGA
  GTCCAGAAGA CAGAAAGCTC ATTGTGCTGT CAGCCTGGTC CTGTGACATT GACTCTGACT
  AGCCATGGGA CTCTGGGGAG GGAGAGATGC TCACCACCAC TCCCTCAGAA CAGCTGAGAT
  CCAGGCCTCT ATAAAGACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47979252	NES11920382	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30734959					SNP	G	A	G	G	G	A	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979252	NES11920382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72360285 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632160	regulatory region 632160	77 bp proximal
Rr632161	regulatory region 632161	178 bp proximal
Rr632162	regulatory region 632162	1535 bp proximal
Tssr57128	transcription start site region 57128	1922 bp upstream
Tssr61449	transcription start site region 61449	1597 bp upstream
Tssr61450	transcription start site region 61450	1543 bp upstream
Vamp8	vesicle-associated membrane protein 8	1919 bp downstream