rs30734110 SNP Detail

Summary

• ID
  rs30734110
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72359012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTACATG CCAGCTCACT
  ACATGCCAGC TCACTACATG CCAGCTCACT ACATGCCAGC TCACTGCGGT CTGTTAACTC
  CAGCTCCGGG GGATCCGATG CCCTGTTCTG GCCTCCAAGG ACACGTGTCA CACATGGTCA
  CAGTCACACA TGCAGAGGAA GCATCTTTAC ACATAAAATA AAAATAATTT AAAGAACAAA
  K
  AGTTTTTAAA AAGACTTTAG TTTTAAGGCA AAAACTCAAT TGTAAATGGA TGCTGGGGAT
  GGGCTTGCCT GTTTTGCCCC AAGCCCTGGG TTTGATGTCC CGCATCATAC AAACCAGACT
  TGGTGGTAGA TGGCAGCATC GGCGAGCCAG CAGCAGAAGG GTCAAGGTTC ACAGCCATGG
  CCTGCTGTCT AATGAATGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47979240	NES11920419	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30734110					SNP	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979240	NES11920419	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72359012 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632157	regulatory region 632157	1618 bp distal
Rr632158	regulatory region 632158	1071 bp distal
Rr632159	regulatory region 632159	1441 bp distal
Rr632160	regulatory region 632160	1350 bp proximal
Rr632161	regulatory region 632161	1451 bp proximal
Tssr61448	transcription start site region 61448	1546 bp upstream
Tssr61449	transcription start site region 61449	324 bp upstream
Tssr61450	transcription start site region 61450	270 bp upstream
Vamp5	vesicle-associated membrane protein 5	1561 bp upstream