rs30734108 SNP Detail

Summary

• ID
  rs30734108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72358718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAACTGG GAACTGAGAA
  GTCCTTTCCT TAATCTCATT GGCCCGTCCC AGCCTCAGGC CAACTTCAAG GTTAAAATGA
  GGTTGTTTGT AAAGAACTGT GCAAAAGGTG CAGAAAGCCT GAAGACTTGT AAAGGATACG
  CTGTGCTCTG AATTCCACAA AAAGCTCACG GAGGAATATA TTAAGTGGTG CTGTTTTATG
  Y
  GCTTAATCGA AGGCTAAAAT GTGAGACCGC AGAGACGGCT CAGCAGTTAA GAGTCCTGGC
  TGCCCCTCCA GAGGACTGAG GTTTAATTGT CAGCACCTAC ATGCCAGCTC ACTACATGCC
  AGCTCACTAC ATGCCAGCTC ACTACATGCC AGCTCACTGC GGTCTGTTAA CTCCAGCTCC
  GGGGGATCCG ATGCCCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47979238	NES11920500	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30734108					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979238	NES11920500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72358718 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632157	regulatory region 632157	1324 bp distal
Rr632158	regulatory region 632158	777 bp distal
Rr632159	regulatory region 632159	1147 bp distal
Rr632160	regulatory region 632160	1644 bp proximal
Rr632161	regulatory region 632161	1745 bp proximal
Tssr61448	transcription start site region 61448	1252 bp upstream
Tssr61449	transcription start site region 61449	30 bp upstream
Tssr61450	transcription start site region 61450	19 bp downstream
Vamp5	vesicle-associated membrane protein 5	1267 bp upstream