rs30734106 SNP Detail

Summary

• ID
  rs30734106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72358692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCGAGGA AACTGCGGCT
  TTTCTTGCAG AACTGGGAAC TGAGAAGTCC TTTCCTTAAT CTCATTGGCC CGTCCCAGCC
  TCAGGCCAAC TTCAAGGTTA AAATGAGGTT GTTTGTAAAG AACTGTGCAA AAGGTGCAGA
  AAGCCTGAAG ACTTGTAAAG GATACGCTGT GCTCTGAATT CCACAAAAAG CTCACGGAGG
  R
  ATATATTAAG TGGTGCTGTT TTATGTGCTT AATCGAAGGC TAAAATGTGA GACCGCAGAG
  ACGGCTCAGC AGTTAAGAGT CCTGGCTGCC CCTCCAGAGG ACTGAGGTTT AATTGTCAGC
  ACCTACATGC CAGCTCACTA CATGCCAGCT CACTACATGC CAGCTCACTA CATGCCAGCT
  CACTGCGGTC TGTTAACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47979236	NES11920499	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30734106					SNP	A	G	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979236	NES11920499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72358692 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632157	regulatory region 632157	1298 bp distal
Rr632158	regulatory region 632158	751 bp distal
Rr632159	regulatory region 632159	1121 bp distal
Rr632160	regulatory region 632160	1670 bp proximal
Rr632161	regulatory region 632161	1771 bp proximal
Tssr61448	transcription start site region 61448	1226 bp upstream
Tssr61449	transcription start site region 61449	4 bp upstream
Tssr61450	transcription start site region 61450	45 bp downstream
Vamp5	vesicle-associated membrane protein 5	1241 bp upstream