rs30734063 SNP Detail

Summary

• ID
  rs30734063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72283456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACGC ACACACACAC
  ACACACACAC ACACACATAC ACACACACAC ACACACACAT ACACACACAC GCACACACAC
  ACACACACAC ACACACACAC ACACACATAC ACACACACGC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACTTCC CACTACAGCC ACAGGAAGCT
  S
  AGTCTCTTCA TCCAGATACC CAAATCAGAG CCTGCCTGCT CAGCATACTA CAGACATTGA
  GACCCGCCCT CCATCCCCTC ACTCACACAT GCCCACATTC TTATTGTCAC ACAATATGCT
  CACACACACT CACTCTTTCC CAGACACATG CTCCCAGGCC CTACACAGCC CCATCTCTGT
  CTTTGTCCCT TCCATAGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978444	NES11923110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30734063					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978444	NES11923110	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72283456 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	1842 bp distal
Rr632127	regulatory region 632127	1996 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57080	transcription start site region 57080	1849 bp downstream
Tssr57081	transcription start site region 57081	1827 bp downstream
Tssr57082	transcription start site region 57082	1425 bp downstream
Tssr57083	transcription start site region 57083	1384 bp downstream
Tssr57084	transcription start site region 57084	812 bp downstream
Tssr57085	transcription start site region 57085	575 bp downstream
Tssr57086	transcription start site region 57086	530 bp downstream
Tssr57087	transcription start site region 57087	495 bp downstream
Tssr57088	transcription start site region 57088	443 bp downstream
Tssr57089	transcription start site region 57089	309 bp upstream
Tssr57090	transcription start site region 57090	362 bp upstream
Tssr57091	transcription start site region 57091	436 bp upstream
Tssr57092	transcription start site region 57092	666 bp upstream