rs30734061 SNP Detail

Summary

• ID
  rs30734061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72283431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACACACA CACACACACA CACACACACA CATACACACA
  CACGCACACA CACACACACA CACACACACA CACACACACA CACACACACA CACACACACA
  Y
  TTCCCACTAC AGCCACAGGA AGCTCAGTCT CTTCATCCAG ATACCCAAAT CAGAGCCTGC
  CTGCTCAGCA TACTACAGAC ATTGAGACCC GCCCTCCATC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47978442	NES11923109	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs30734061					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978442	NES11923109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72283431 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	1817 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57080	transcription start site region 57080	1824 bp downstream
Tssr57081	transcription start site region 57081	1802 bp downstream
Tssr57082	transcription start site region 57082	1400 bp downstream
Tssr57083	transcription start site region 57083	1359 bp downstream
Tssr57084	transcription start site region 57084	787 bp downstream
Tssr57085	transcription start site region 57085	550 bp downstream
Tssr57086	transcription start site region 57086	505 bp downstream
Tssr57087	transcription start site region 57087	470 bp downstream
Tssr57088	transcription start site region 57088	418 bp downstream
Tssr57089	transcription start site region 57089	334 bp upstream
Tssr57090	transcription start site region 57090	387 bp upstream
Tssr57091	transcription start site region 57091	461 bp upstream
Tssr57092	transcription start site region 57092	691 bp upstream