rs30734059 SNP Detail

Summary

• ID
  rs30734059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72282772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCAACTC ATTAGCCTCA
  CTTGAGACCC TTTCTTCCAG AATGACCTGT GCCAAGAGTG TGAGGATATT GTCCACCTCC
  TCACAAAGAT GACCAAGGAA GATGCTTTCC AGGTAATGGG AAACGGTACA GTGTGATCTG
  GTAGAGGCCT GGCGTCAGGG GACTCTGGTG GGGGCAGACC TCAGAAAGAC CAGGCTAATC
  Y
  TCCCTTCTCT GCTCTCCCAG GAAGCAATCC GGAAGTTCCT GGAACAAGAA TGTGATATCC
  TTCCCTTGAA GCTGCTTGTG CCCCGGTGTC GCCAAGTGCT TGATGTCTAC CTGCCCCTGG
  TTATTGACTA CTTCCAGAGC CAGATTGTGA GGACCCTGAC CTACCTGCCG CACAGTGCAT
  GTGCCTAAGT GGGCACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978440	NES11923154	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30734059					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978440	NES11923154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72282772 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	1158 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	1474 bp downstream
Tssr57079	transcription start site region 57079	1458 bp downstream
Tssr57080	transcription start site region 57080	1165 bp downstream
Tssr57081	transcription start site region 57081	1143 bp downstream
Tssr57082	transcription start site region 57082	741 bp downstream
Tssr57083	transcription start site region 57083	700 bp downstream
Tssr57084	transcription start site region 57084	128 bp downstream
Tssr57085	transcription start site region 57085	64 bp upstream
Tssr57086	transcription start site region 57086	142 bp upstream
Tssr57087	transcription start site region 57087	179 bp upstream
Tssr57088	transcription start site region 57088	192 bp upstream
Tssr57089	transcription start site region 57089	993 bp upstream
Tssr57090	transcription start site region 57090	1046 bp upstream
Tssr57091	transcription start site region 57091	1120 bp upstream
Tssr57092	transcription start site region 57092	1350 bp upstream