rs30734057 SNP Detail

Summary

• ID
  rs30734057
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72282707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGCCTTA AGGTACCTGT
  CAGCCTGTGT CTGAGAAAGC CTCAATCCCT GGAGTTAGGA GCATGCCCCC AACTCATTAG
  CCTCACTTGA GACCCTTTCT TCCAGAATGA CCTGTGCCAA GAGTGTGAGG ATATTGTCCA
  CCTCCTCACA AAGATGACCA AGGAAGATGC TTTCCAGGTA ATGGGAAACG GTACAGTGTG
  M
  TCTGGTAGAG GCCTGGCGTC AGGGGACTCT GGTGGGGGCA GACCTCAGAA AGACCAGGCT
  AATCCTCCCT TCTCTGCTCT CCCAGGAAGC AATCCGGAAG TTCCTGGAAC AAGAATGTGA
  TATCCTTCCC TTGAAGCTGC TTGTGCCCCG GTGTCGCCAA GTGCTTGATG TCTACCTGCC
  CCTGGTTATT GACTACTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss47978438	NES11923153	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs30734057					SNP	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978438	NES11923153	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72282707 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	1093 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	1409 bp downstream
Tssr57079	transcription start site region 57079	1393 bp downstream
Tssr57080	transcription start site region 57080	1100 bp downstream
Tssr57081	transcription start site region 57081	1078 bp downstream
Tssr57082	transcription start site region 57082	676 bp downstream
Tssr57083	transcription start site region 57083	635 bp downstream
Tssr57084	transcription start site region 57084	63 bp downstream
Tssr57085	transcription start site region 57085	129 bp upstream
Tssr57086	transcription start site region 57086	207 bp upstream
Tssr57087	transcription start site region 57087	244 bp upstream
Tssr57088	transcription start site region 57088	257 bp upstream
Tssr57089	transcription start site region 57089	1058 bp upstream
Tssr57090	transcription start site region 57090	1111 bp upstream
Tssr57091	transcription start site region 57091	1185 bp upstream
Tssr57092	transcription start site region 57092	1415 bp upstream