rs30733312 SNP Detail

Summary

• ID
  rs30733312
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72358613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTTAG ATTCCTGGTG
  TGGGCCTTGC GGGATGGTCC TCTAACAGGT GAGGAAGATG GAGTTCTTGA CGAAGAGAGA
  TGCCGAGGAA ACTGCGGCTT TTCTTGCAGA ACTGGGAACT GAGAAGTCCT TTCCTTAATC
  TCATTGGCCC GTCCCAGCCT CAGGCCAACT TCAAGGTTAA AATGAGGTTG TTTGTAAAGA
  W
  CTGTGCAAAA GGTGCAGAAA GCCTGAAGAC TTGTAAAGGA TACGCTGTGC TCTGAATTCC
  ACAAAAAGCT CACGGAGGAA TATATTAAGT GGTGCTGTTT TATGTGCTTA ATCGAAGGCT
  AAAATGTGAG ACCGCAGAGA CGGCTCAGCA GTTAAGAGTC CTGGCTGCCC CTCCAGAGGA
  CTGAGGTTTA ATTGTCAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47979232	NES11920493	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	A	A	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733312					SNP	A	T	A	A	A	A	A	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979232	NES11920493	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72358613 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632157	regulatory region 632157	1219 bp distal
Rr632158	regulatory region 632158	672 bp distal
Rr632159	regulatory region 632159	1042 bp distal
Rr632160	regulatory region 632160	1749 bp proximal
Rr632161	regulatory region 632161	1850 bp proximal
Tssr61448	transcription start site region 61448	1147 bp upstream
Tssr61449	transcription start site region 61449	50 bp downstream
Tssr61450	transcription start site region 61450	124 bp downstream
Vamp5	vesicle-associated membrane protein 5	1162 bp upstream