rs30733306 SNP Detail

Summary

• ID
  rs30733306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72358483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTGGA TAAGAATAAA
  ATACAAACTA CACAGACTGT CTTGAAGAGT TTCACAGCAT GAGTTTAGGA CAGAGTTGCA
  AGCTGCTGCA AGGAAAACAA ACAGGTGTTG CCCAGCCTGA GAACACACAC TTTCTCTTAG
  ATTCCTGGTG TGGGCCTTGC GGGATGGTCC TCTAACAGGT GAGGAAGATG GAGTTCTTGA
  M
  GAAGAGAGAT GCCGAGGAAA CTGCGGCTTT TCTTGCAGAA CTGGGAACTG AGAAGTCCTT
  TCCTTAATCT CATTGGCCCG TCCCAGCCTC AGGCCAACTT CAAGGTTAAA ATGAGGTTGT
  TTGTAAAGAA CTGTGCAAAA GGTGCAGAAA GCCTGAAGAC TTGTAAAGGA TACGCTGTGC
  TCTGAATTCC ACAAAAAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47979226	NES11920488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30733306					SNP	C	C	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979226	NES11920488	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72358483 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632156	regulatory region 632156	1894 bp distal
Rr632157	regulatory region 632157	1089 bp distal
Rr632158	regulatory region 632158	542 bp distal
Rr632159	regulatory region 632159	912 bp distal
Rr632160	regulatory region 632160	1879 bp proximal
Rr632161	regulatory region 632161	1980 bp proximal
Tssr61448	transcription start site region 61448	1017 bp upstream
Tssr61449	transcription start site region 61449	180 bp downstream
Tssr61450	transcription start site region 61450	254 bp downstream
Vamp5	vesicle-associated membrane protein 5	1032 bp upstream