rs30733228 SNP Detail

Summary

• ID
  rs30733228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72305427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGGAG CTCTAAATTA
  AGAGTTAAAC ACGGGGCTGG GAGGCTTGAG AAAGGCAATA CACTTAGTAC GTATATGAGA
  TGTATGCACT GGGGAGTGCC TAGAACATGT GTAAGTGTAA GTATATGACA TGTATGGAAA
  GACAAGGCGA CTGGGGAGTG CCTGGTCTGG GAGAGCTTGC CTTCTACGTC CGAGGCCCTG
  Y
  CGCTAACACT ATGAAAAAGA TGAGAAAGTT AAAAACAAAG TGAGCGAGCA GGCAAGGGTG
  GTGACCTGGT TACCTTCTCC GTGATGCCGT TGAACTTGGC CAGGATGTTG AAGAGAGGCA
  CCTGGGGGAT GATGAGCTGC TCCTTCTCAT CCTTATAGAG CGGGGCCGTG GGAAGGTCCA
  GCGTCAGGTA CATGAACGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978728	NES11922004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733228					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978728	NES11922004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72305427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632133	regulatory region 632133			1801 bp distal
Rr632134	regulatory region 632134			1891 bp distal
Rr632135	regulatory region 632135			1535 bp distal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant