rs30733226 SNP Detail

Summary

• ID
  rs30733226
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72305414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGAGCC ATGTAGGAAG
  GAGCTCTAAA TTAAGAGTTA AACACGGGGC TGGGAGGCTT GAGAAAGGCA ATACACTTAG
  TACGTATATG AGATGTATGC ACTGGGGAGT GCCTAGAACA TGTGTAAGTG TAAGTATATG
  ACATGTATGG AAAGACAAGG CGACTGGGGA GTGCCTGGTC TGGGAGAGCT TGCCTTCTAC
  K
  TCCGAGGCCC TGCCGCTAAC ACTATGAAAA AGATGAGAAA GTTAAAAACA AAGTGAGCGA
  GCAGGCAAGG GTGGTGACCT GGTTACCTTC TCCGTGATGC CGTTGAACTT GGCCAGGATG
  TTGAAGAGAG GCACCTGGGG GATGATGAGC TGCTCCTTCT CATCCTTATA GAGCGGGGCC
  GTGGGAAGGT CCAGCGTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978726	NES11922003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T		G	G	G	G
ss133283847	ENSMUSSNP2188027	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733226					SNP	G	G	G	G	G	G	T	G	G	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978726	NES11922003	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72305414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632133	regulatory region 632133			1788 bp distal
Rr632134	regulatory region 632134			1878 bp distal
Rr632135	regulatory region 632135			1522 bp distal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant