rs30733092 SNP Detail

Summary

• ID
  rs30733092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72282049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCAGAGC TGCCTGGCAG
  AAGCAATGGC CACTCCTTTG CAATGAAACT GGGTTGGAGG TGGGGTGAAG GCAGGGTGCC
  GAGTGTATGC TGGATCCTGA TGAGAGTTGC TCTGACCCCA ACTCCAGCTA TCACGTCGGC
  CTCATCCCTG GAGTGTGCAC AAGGCCCTCA ATTCTGGTGC CAAAGCCTGG AGCATGCAGT
  R
  CAGTGCAGAG CCCTGGGGCA CTGCCTGCAG GAAGTCTGGG GGCATGCAGG AGCTGTGAGT
  AGCACTAAGC GGGCACTGGA AATCCAGGGA GGAGGAACTG GGGTGGATTC TGAGCGGACC
  TTAGGAAATT GGAGTTCCCA CAAGGCTGGG GTGGCAGGGA ATGATGGAAT GGTATAGTGT
  GACAGGAAAT GGTGGGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47978432	NES11924129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs30733092					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978432	NES11924129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72282049 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	435 bp distal
Sftpb	surfactant associated protein B	Coding-Synonymous
Tssr57078	transcription start site region 57078	751 bp downstream
Tssr57079	transcription start site region 57079	735 bp downstream
Tssr57080	transcription start site region 57080	442 bp downstream
Tssr57081	transcription start site region 57081	420 bp downstream
Tssr57082	transcription start site region 57082	18 bp downstream
Tssr57083	transcription start site region 57083	3 bp upstream
Tssr57084	transcription start site region 57084	578 bp upstream
Tssr57085	transcription start site region 57085	787 bp upstream
Tssr57086	transcription start site region 57086	865 bp upstream
Tssr57087	transcription start site region 57087	902 bp upstream
Tssr57088	transcription start site region 57088	915 bp upstream
Tssr57089	transcription start site region 57089	1716 bp upstream
Tssr57090	transcription start site region 57090	1769 bp upstream
Tssr57091	transcription start site region 57091	1843 bp upstream