rs30733090 SNP Detail

Summary

• ID
  rs30733090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72281931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAAAGA CCCCAGTCTG
  CACATAATCC AGAATTTAAA TGCCAGTTAG CTGAGGCACA GAGAAGTCCT AGGGCCTCAT
  CCAAGGTCAC AGTTAGTGGA TGGATGTTGA AGCAGGAGGA CTCAGAGCTG CCTGGCAGAA
  GCAATGGCCA CTCCTTTGCA ATGAAACTGG GTTGGAGGTG GGGTGAAGGC AGGGTGCCGA
  R
  TGTATGCTGG ATCCTGATGA GAGTTGCTCT GACCCCAACT CCAGCTATCA CGTCGGCCTC
  ATCCCTGGAG TGTGCACAAG GCCCTCAATT CTGGTGCCAA AGCCTGGAGC ATGCAGTGCA
  GTGCAGAGCC CTGGGGCACT GCCTGCAGGA AGTCTGGGGG CATGCAGGAG CTGTGAGTAG
  CACTAAGCGG GCACTGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47978430	NES11924127	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30733090					SNP	G	G	A	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978430	NES11924127	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72281931 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	317 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	633 bp downstream
Tssr57079	transcription start site region 57079	617 bp downstream
Tssr57080	transcription start site region 57080	324 bp downstream
Tssr57081	transcription start site region 57081	302 bp downstream
Tssr57082	transcription start site region 57082	93 bp upstream
Tssr57083	transcription start site region 57083	121 bp upstream
Tssr57084	transcription start site region 57084	696 bp upstream
Tssr57085	transcription start site region 57085	905 bp upstream
Tssr57086	transcription start site region 57086	983 bp upstream
Tssr57087	transcription start site region 57087	1020 bp upstream
Tssr57088	transcription start site region 57088	1033 bp upstream
Tssr57089	transcription start site region 57089	1834 bp upstream
Tssr57090	transcription start site region 57090	1887 bp upstream
Tssr57091	transcription start site region 57091	1961 bp upstream