rs30733088 SNP Detail

Summary

• ID
  rs30733088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72281484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGGTG GGGCTAGAGA
  GGCTCATTCT GACCCCACTC AGCATCCCTT GCACAGTCCA GAGCGTGGGG ATCAAACGAG
  ACCCCCTTGT TTGACGGTGA ACAAAGTCAG GCTGAGGGGG TTCGGGAAGG GGGTAAAGGA
  CTAGGAACCG ACATCGGCCA GCACACGGGA GGTGGACAGG GGTGTCCCTG CTGAGAAGAC
  Y
  TGGAGGGCTC TCAAGACACA GGCAAACACT GAGGTCAGCC TGTTCCCATG GAGTCCAGCC
  CCCAGGTCCT CTCCCCTACT ATAAGAGCCC ATGACTCAAG TAGGGTACTA AGCAGTAGGC
  AGCCATGGCC AAGTCGCACC TACTGCAGTG GCTACTGCTG CTTCCTACCC TCTGCTGCCC
  AGGTGCAGGT GAGTCCCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47978428	NES11924196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30733088					SNP	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978428	NES11924196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72281484 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	1606 bp distal
Rr632126	regulatory region 632126	within coordinates
Sftpb	surfactant associated protein B	110 bp upstream
Tssr57078	transcription start site region 57078	186 bp downstream
Tssr57079	transcription start site region 57079	170 bp downstream
Tssr57080	transcription start site region 57080	92 bp upstream
Tssr57081	transcription start site region 57081	126 bp upstream
Tssr57082	transcription start site region 57082	540 bp upstream
Tssr57083	transcription start site region 57083	568 bp upstream
Tssr57084	transcription start site region 57084	1143 bp upstream
Tssr57085	transcription start site region 57085	1352 bp upstream
Tssr57086	transcription start site region 57086	1430 bp upstream
Tssr57087	transcription start site region 57087	1467 bp upstream
Tssr57088	transcription start site region 57088	1480 bp upstream