rs30731782 SNP Detail

Summary

• ID
  rs30731782
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72221013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTAAAG AGTGAGTTCC
  AGGACAGCCA GGGCTACACA GAGAAACCCT GTCTCAAAAA ACAAACAAAC AAACAAAAAA
  GGAGAAGAGA GAAAAGAGAA AGGAGAAAAA AAGGGATTAA GATTATTTAT GAAAGAGGCT
  TGGCAAATAG TAACCACTAG CAGGCGATCG AAAGAGTCTT TCCTTATAGC ACAATGTATC
  K
  CCCACACCTC CTCCAGGAAG CCCCCCCTGA ACACCTGAGT CCATTCACAC ACCCTGCTCT
  GGGGGAGGGG GCTTTCCAAG AAAAGTTGCC TGTGCCTGTA CTGGGAGGCT TCTTTCTCAG
  TCACAGGGTC CCCCACTCTC TCCCACCAGT GTGCCCCTCC ACCTTTGAGC CAAGGACTCA
  ATGGGTACAG AACAACGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47977642	NES11927517	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	G	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30731782					SNP	T	T	G	T	T	T	T	T	T	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47977642	NES11927517	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72221013 () rs orientation: forward

Symbol	Name	Function Class
Gm67899	predicted gene, 67899	565 bp upstream
Rr632104	regulatory region 632104	1760 bp distal
Rr632106	regulatory region 632106	1788 bp distal
Rr632107	regulatory region 632107	within coordinates