rs30731774 SNP Detail

Summary

• ID
  rs30731774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72220115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGAGAGG AGAAAGAGCT
  CACCTGATAT CCCATGGGGG TTGCAGATCC CAGGCCCTGA TCCTGACTCT AGGTAAGAAC
  CTCCTACCGA GTATGAACCC CACTTTCATC CCAGGGAAGG TGGTCCTGAG CAAAGGTCTG
  GGTGGCCAAG AACTTGGCAC ATGAAGGGAG TCTGCGGAGG GTGTGAGTCC GGGTACTGGA
  Y
  GGTAGCCAGG CGATAGGAAA GAACCCCTGT AACAGAAAAT GCAGGAGGAG TGGCCAGAGG
  TCCAGTCACC ACCTCCTAGG CCCATCTCTC AGCTTCAGAC AACTCTGTCC CAAGACCCTA
  GGAAGCGCAG CCACCTCCCT AGGTCCTTAT TATCCCTCAT TTTGAGCTAA GGTGCTAGAG
  GAGAAAGTAG CTCCTACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47977634	NES11927593	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30731774					SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47977634	NES11927593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72220115 () rs orientation: forward

Symbol	Name	Function Class
Gm67899	predicted gene, 67899	within coordinates
Rr632104	regulatory region 632104	862 bp distal
Rr632105	regulatory region 632105	1285 bp distal
Rr632106	regulatory region 632106	890 bp distal
Rr632107	regulatory region 632107	848 bp proximal