rs30731599 SNP Detail

Summary

• ID
  rs30731599
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57480668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAGTTT AAAAATCATC
  TGCGGCCAAA AGGGACCATC GAAAATTACT GAGACGCTAC TTGTATTTAT TGCAAAGTTC
  ACATTGGTAA AAAAAAAAAA AATCATGGTG AAATACATAC AGCTGCATTT ATACACAATG
  CTATTTTGAA CATGTATGCA GTACGGACAC TAATATCTTC CTTTGGAGAC TTAGAAAAAC
  K
  CCATGCTATT ACATTGCATA TCTGACTTCA ACCTCCACTT AGAAATCAAA GCCCTGAGCA
  TGTGTCTACA CCATGCATGG CTCAATAATC CAGACACCAA CTGTGTGCCA AAGCCATTGA
  GTTATCTTCA GGATGCCAGC ACCACAGTAA GCCCCAAAAC AAAGATTACA AATACAACAA
  AAAGTATATC CCCAAGAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978319	NES10794568	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30731599					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978319	NES10794568	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57480668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	1419 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	1396 bp proximal
Rr577124	regulatory region 577124	395 bp distal
Wwtr1	WW domain containing transcription regulator 1	Intron