rs30730146 SNP Detail

Summary

• ID
  rs30730146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132640257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGTGGTA CAGAGTGTAC
  CTAAAGCATG TGTGTGAGCC CTGGGCTTGA TCTCCAGCAA TGGAAAGCAA TCTTCAGAGC
  CATGCATGAT GGTATGCACT TTTAATAGCA GCATTTGGGA GGAATAAATA GAAGGATCAC
  AAGTCTGAGG CCAGCTTTGA CTCCCTGGTG GGAACAGTAA GGACAGGAAG AAGGGAGATG
  Y
  GAGAAGAAGC CAGATGAGGG ATAGGGCACA GAACCTGAAG GTAGTAACTC CACTCACGGT
  GCAGATCTGC TTGTTTGCAG TTTAATTTAC TATAAAGAAT TGTGAGCTAC TCAACTGTTA
  GGCTGCTTAA AACCTTTGGA AAGAAACAGT TAAGTACTAC ACATTGAGAT GGCTTGTACA
  GTTACTACAT GAGGCCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46979046	NES10883629	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30730146					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979046	NES10883629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132640257 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	1557 bp distal