rs30729622 SNP Detail

Summary

• ID
  rs30729622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132639892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAGCTC ATTTGGAGCT
  CGTCATAATA CAGAAAAACC TGGCCCACTT TTCTCCTGAT AATCTGGTCC TCCACAGCTA
  TTGTAAAATG GTCATGGGTG TCAAATACAT TCAACATTGC CCGCAAACCC ACTGGTTTGT
  AGTGCAGGAC TCAGTCTTCC CTGCCTCCAT TCATCGGAGA CTTCTGATAA TTCACATTTT
  Y
  CTACATACCC TTAAAATTAA TAAGCACATG GATATGTTTA TGAAGCTGTT GCACACTAAA
  TAAACTATTA AGTGACCAGC TTTTCTTGCC TGCTGAGCAC AGCTTTGTGG ATTTGGAGAC
  AGTCCCAAGG TTCAGACAGT GTTAAAGATG ACGGGGAGAT GTACTTCGGT GGTACAGAGT
  GTACCTAAAG CATGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46979042	NES10883698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30729622					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979042	NES10883698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132639892 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	1192 bp distal