rs30729618 SNP Detail

Summary

• ID
  rs30729618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132639186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGCTA GCTTTTTTCC
  CGTGTTGTTT ATGTTTATAA TTTGCATGTT GTTTTTATTG CCTTTGATTT TAAAATAATC
  CACCATATGT TGACAGAGAC CTATTTGTTT AGATAGAATA GTGAAATGCA TCAAGTATTG
  TCTAAAGAAA CTCTGGAAAT AAGTCAAAGC ATAAAGCACA TGCGGGTGGC ATATTTAGAC
  R
  TTGGATTTGT GGCCATGATT ATGCACAAGA AAGAAAATGT AAGCGAACAC TATTTCTTTA
  ATACATTCCA TAACCAACTT TGAATAATTT ACCTGCAAAA ATACTTTAAA TTATTTTAAA
  CGAAAGAAAA AAGAGTCATT AAAGGATAGA AAGCATCATT ATTTACAAGC TAGCTGTCTC
  AGTACCACAC AGCTCAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46979038	NES10883694	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30729618					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979038	NES10883694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132639186 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	486 bp distal