rs30728770 SNP Detail

Summary

• ID
  rs30728770
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132637075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGTTAT TTGATACAGT
  AAAAAGATTT CTTACCTGAA TTGTTCCTCG GAGAATTAAT AAACATGAAA CATAATTCCC
  ACAGGTTAGT GATGGGCTGG CATTAGTAAT TTCACTTGGT AGACTTTACA TACATATATA
  CATTTGCCTC TCTAAGAATT AAAAGTTTAA ACTGTCTTAT AGGTTAGGAT GGAGGTCAGT
  W
  TATTAGATTT GTAAATCAAG AGGGAGAAAT AAAATTTGAA AGGAAAAAGT TTAACCTAAC
  CACTCAGTTA AAGTTAGAAT AAGTAAAAGG GAAAACATGA AAAACAAAAC ACCCCACTTC
  TCTGTGGAAT AGAGTTTCCC CCAAATAAGA CACTCAAAAC CAAGAAATGT TAAGCCTTTC
  TTGTAGCTTT ATAAAGTATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46979030	NES10883742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30728770					SNP	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979030	NES10883742	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132637075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13845	CpG island 13845	1800 bp distal
Npnt	nephronectin	Intron
Rr585482	regulatory region 585482	1017 bp distal
Rr585483	regulatory region 585483	1604 bp proximal