rs30728768 SNP Detail

Summary

• ID
  rs30728768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132636837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTAATTT TTTCACCAAA
  TGTTCTTATT GAAATCCTAC CTTTGAACCG TCTCTGGGGA CATGGGACAC CTCCTTCAGC
  ACCCATGTTG TGTTGCCTCC TTGGAACGGA TTGCACTTTG TAATTTGGTA TTACCTCACC
  CAGATTGTTC GCTGAAGTTG TGAAGGGCTT GGTAAGTGAC CTTACTCAGT GCACAGATGT
  R
  TAACCAAAGC ACCAGGATGC AGGTGTGGTC AATATACAGC TTGTTATTTG ATACAGTAAA
  AAGATTTCTT ACCTGAATTG TTCCTCGGAG AATTAATAAA CATGAAACAT AATTCCCACA
  GGTTAGTGAT GGGCTGGCAT TAGTAATTTC ACTTGGTAGA CTTTACATAC ATATATACAT
  TTGCCTCTCT AAGAATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46979028	NES10883741	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30728768					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979028	NES10883741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132636837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13845	CpG island 13845	1562 bp distal
Npnt	nephronectin	Intron
Rr585482	regulatory region 585482	779 bp distal
Rr585483	regulatory region 585483	1842 bp proximal