rs30727683 SNP Detail

Summary

• ID
  rs30727683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57881382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGTCTT TTCATGCTCT
  GATTTTGTTT CCATATCTTC GTATCTTGTT TGCCTGCCTG CCTCCAGGCA GTGCGTCAAT
  CCAGACAGAA CAGGAATTTA GCTGTGGTTC AAACAGTGCT GCCATTGCTT GTAACAGTAC
  CTGGGATCTG GGTGGTGGTG GTCAGTAGCT AGATTTTGAA GTACCAGGCT AAAATAATGA
  K
  CAAATGGGGT TGAAACGACA TGATCCATGG GAGTTTAAAG TCACAGAAGA GTCTGAGGTT
  CAAGGGTTGG AAGTAAACTC ATTTTTACCT CATCTCTGAG TCTCCAAGAA ACATCTGGTT
  TGTGTATGTG TTTAATTATA ATGTACCTCA TTACAAAAGA ATTTGACTGC ATTATTTTCA
  AAGATATGTT TGTATCTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45522108	mCV24603855	ABI	CRAMUS_MOUSE	f	SNP		T	G					T	T
ss46978685	NES10794276	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	G	T	T	G	T
ss135205302	ENSMUSSNP4390135	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30727683					SNP	T	T	G	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978685	NES10794276	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57881382 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	978 bp distal