rs30727676 SNP Detail

Summary

• ID
  rs30727676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57881106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAGTGC CTATCTACAG
  GGCTCTCTCC AGGGTGCAAC TAACCCCTAG CCACATACAC CTACCTTCTT TCTATAAACA
  TATTCAGGTC AGCCAGGCAC TAGAGCATGG ACCTGGGTGT TTCTCTCTTC AGGGAATTTC
  TCTCTCACAT CCACAGGTCC TGGCCAGGGT CATCTTTCAG AGAGGATTCC ACCCACTGGG
  Y
  AGAGCAAGTT GCAACACCAG GGGCCTCCTT TGCCTTGTGC CATTTTCTTT ATGCGCCTTT
  TTTTGTCCCC CTCTGAAAAT GTCTTTTCAT GCTCTGATTT TGTTTCCATA TCTTCGTATC
  TTGTTTGCCT GCCTGCCTCC AGGCAGTGCG TCAATCCAGA CAGAACAGGA ATTTAGCTGT
  GGTTCAAACA GTGCTGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978677	NES10794272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30727676					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978677	NES10794272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57881106 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	702 bp distal