rs30727348 SNP Detail

Summary

• ID
  rs30727348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126403285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGTCACTTT GGTGTTTGTA ACGATTCATT CCAATAGGAG TCCAGTTTCC ATCTTGCTCT
  ACAGCCCTTT TCAATAGCTT CCCCAGCAGA CTTGCTGGCT GACAGTTGTT ACATTGTTAA
  CACATAAACA CACACTCTAT TCAATCACTC CTGAGACCCT ATGGCAGTGA CTTGTTCTGA
  GTAACTTGAC TACTTCCTGC CCTCGCAGTA GACAGTTTCT ATCCTCCAGT ACAGCGGCCT
  CCCTAAGGCT GAGACCCTCT AACCCAATTC CTCATGTGGT GGTGACCCCC CCCCTGCCCC
  Y
  ACCCCCCTAA CCATAAAATT ATTTTTATTG CTACTTCTTA ATTGACATTT TGCTACTAAT
  TGCTAATCAT AATGTTAATA TTTATATTTT CCGATGGTTT TGCGTGACCC TGTGAAAAGG
  GACAGGACCC AGAGGTTGAC AAACTCTGAT CTAGTATTTC CAGCTCTACT GGGGTGGAAG
  CCGACCTAGA GAATACAGAA TTGTGAGAGG GCTGTTAAGA GATAAGGCCT TTGAGGAAGT
  GCTTTAAGAT CAGGAAGAGA TAGCTGTACT GGCATCGGGG CTACTGTGCT GAGAGAAAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45459779	mCV23467136	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135837028	ENSMUSSNP3629511	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30727348					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126403285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			228 bp upstream
Rr584652	regulatory region 584652			239 bp distal
Rr584653	regulatory region 584653			within coordinates
Rr584654	regulatory region 584654			1267 bp proximal
Rr584655	regulatory region 584655			1841 bp proximal