rs30726830 SNP Detail

Summary

• ID
  rs30726830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57880704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGAGGCA CAGTGAGACA
  GGAGGGTCTG CACCAAAGAT ACCCACATGT TCTCCCAAAA CGAATTATTT CCTACTAAAT
  AAAATTGCTC AAATTGCTCT CTTGGTTCAA GTGAATGTCT TGCAGAAGTC AGCCAGGAAG
  TAGGCTGGGT GGTTCACATT GAGGCTTGTC TCTCTGCCAG CATCTCTAAA CTGAGCCCAA
  Y
  TCTATTCAAT GCCAGTTGTA TGTCCAGCAT CTCATAGCTG AAGAAGCCAC AATAAGAGTT
  GTTCTAGTGT GTCTTCTGCT TCTGAACAAG CTTCACTCCA ATGTAACCGT GGCTATTCAA
  AATCAGGAAT AAGATGCTCT GTTCAGATGA ATTTCCACAT CCTTCTGGTT AGTAATCCCT
  ATGCTATCTC TCTCTCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978671	NES10794269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
ss135205296	ENSMUSSNP4888350	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30726830					SNP	C	?	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978671	NES10794269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57880704 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	300 bp distal