rs30726425 SNP Detail

Summary

• ID
  rs30726425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132591770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATTTCT TCCCCACAGG
  GCTGCTCCGT GGGTACCGTG TTTCCTCACA AACACCTGCA GTGTGCCCGA GTGCAGCCCA
  GTCACCTTGT GCCTAAAGGA CAGGCACAGG TCCCCTGAAT GCATGAGGTG GCCGAGACGT
  AACACCAAGC GAGCGGCTTT TCCCCCCGGG GCTTTGGCTG CAGACACTGT GAGATACTGT
  Y
  CACCTGCAAT GGCAAAGCAG GGCCTCTTTC TAGCACAAAC TGCACGGACA GGAGATTTTT
  AATAAACTTC ATACTGTAAC ATTCATTGAT GAAGAATCTC AGATCTCTAT GAAGAAAAAC
  AATAGCTTAT TTCTACGCCT GTTGTAAATG CTATGATGTT CACAAATAAC ACCCACGTAC
  TTTGCCCACA GAAGACAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978466	NES10885420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30726425					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978466	NES10885420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132591770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13844	CpG island 13844	49 bp distal
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	Coding-NonSynonymous
Rr585477	regulatory region 585477	1121 bp distal