rs30725673 SNP Detail

Summary

• ID
  rs30725673
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132591707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTTCCTC ACAAACACCT GCAGTGTGCC CGAGTGCAGC
  CCAGTCACCT TGTGCCTAAA GGACAGGCAC AGGTCCCCTG AATGCATGAG GTGGCCGAGA
  S
  GTAACACCAA GCGAGCGGCT TTTCCCCCCG GGGCTTTGGC TGCAGACACT GTGAGATACT
  GTCCACCTGC AATGGCAAAG CAGGGCCTCT TTCTAGCAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45516987	mCV23575518	ABI	CRAMUS_MOUSE	f	SNP		G	C					C		G
ss46978464	NES10885418	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		G	G	C	G		C	C	G		G
ss135915051	ENSMUSSNP564044	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss320970155	CHEV_3_132548910	CHEVERUD	SCREENING_POP	f	SNP													G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30725673					SNP	G	G	C	C	C	C	C	C	G	G	C	G	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978464	NES10885418	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132591707 () rs orientation: forward

Symbol	Name	Function Class
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	Coding-NonSynonymous
Rr585477	regulatory region 585477	1058 bp distal