rs30725669 SNP Detail

Summary

• ID
  rs30725669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132590511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCTTTT CCCAGTGCTC
  ACTCATGGAG CATGGTAAGG CAACCCTTCC CCCAAACCGA AGATCAGATT TCTATGGCAA
  GTGGGAACAC TAGAGCTCAA GGGCCAGCCT CGTCCCGGGC CCTGGCCTTT CAGGATGCCC
  TCCGACTGAT CGTCCAGCTG CTCATCAGAC CGAAGGGCCC AGAATCAGTT ACTCTTCAAA
  Y
  TGGCATTCTC ACTACACACT CGTTTACTGC AGAAATGTTG GCAAAGTAGA CAATGGTCAA
  AGATTACCAA GGTTTGGAAG GAAGAAGAGT AGAGTGTGAC ACAATGCTGA GGAAGTAGGG
  GCTAAAGAGC CCCCAGCTTT TAGAGATTTT ACTCTTTCAC ATTTTATCCT CTGTAGGGTA
  TCCCTGCTCC CTTAAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978460	NES10885414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30725669					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978460	NES10885414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132590511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13844	CpG island 13844	965 bp proximal
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	Intron
Rr585476	regulatory region 585476	1048 bp distal
Rr585477	regulatory region 585477	within coordinates
Tssr35736	transcription start site region 35736	1358 bp upstream