rs30725667 SNP Detail

Summary

• ID
  rs30725667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132590289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCCCT AGGCCTGATA
  AGAGGGAGAC AAGAGGGCAA GCATTGGGAA ATGAGGGAGA GCGACAAATT CACTGCTAGC
  TCGGGAGCTG CCAGGGGTCT TCTCAGCAGC GACCTCTTTT CAAGCTCACA TCATCCAATC
  CAATCTCCCC CGTGTGACCA CGCCTTTTTT CACCTTTGAA GATGACCTAG GGAGAGAACG
  Y
  ATACACTGGT CAGGCCTCCT CTGCCCCTTT TCCCAGTGCT CACTCATGGA GCATGGTAAG
  GCAACCCTTC CCCCAAACCG AAGATCAGAT TTCTATGGCA AGTGGGAACA CTAGAGCTCA
  AGGGCCAGCC TCGTCCCGGG CCCTGGCCTT TCAGGATGCC CTCCGACTGA TCGTCCAGCT
  GCTCATCAGA CCGAAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978458	NES10885412	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30725667					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978458	NES10885412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132590289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13844	CpG island 13844	1187 bp proximal
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	Intron
Rr585476	regulatory region 585476	826 bp distal
Rr585477	regulatory region 585477	20 bp proximal
Tssr35736	transcription start site region 35736	1136 bp upstream