rs30725071 SNP Detail

Summary

• ID
  rs30725071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57879252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTATGA ATACAGTCCT
  AGGCGCAGAT GCTTCTCTTC AATTCTAAAC CCAGGCGTGC CTCGTGACTG TACTGGTTCT
  ACCTCTAGAA TTCTTTCAGT TAATTAAAAG AAAAAAAAAA AAAACCTGAG CTGCAATTAC
  CTGTGAGATC CACAGCTACA TACCATTGCA TTTTTTTTTT AAATTAAAGC TTATCATTTG
  Y
  TAAACAAAAA TGTTAAGAAC ACACTACAGT TCTGTGACCT GTGACCCTGT TTTGACAGTG
  CTCTGTAATG CTAATAGCTA AGCGTTCATG GAGAGCTTAT GTTCTGGCCT TAGAAAATTC
  CACAACAATT TAAATAGAAA TGAATGGTCA CGCTGCTTTA CAAGCGAGCA AACTGCGGCC
  CAGGCCTATG GATACAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978651	NES10794259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30725071					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978651	NES10794259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57879252 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	673 bp proximal