rs30724759 SNP Detail

Summary

• ID
  rs30724759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132589702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTGCCT TTGACCTTGC
  AACTAGAGTC TGTGGATATT CGGAACATGT AAATACTTAT AGTAATAGCA CATTTACACA
  AACACAGTAC TGCTAACCAG GAAATTCCAT GCCCACCCTA TATAACTGTC TTTAACAGAA
  AGACACAGTT TACAAGAATA AATGCATCTT AATATGTTGC ACACCCCTCC GTTATAAAGA
  R
  TATGGATTGA GGTCAGGCCA GAAGTAACTG AAGTGAAAAA GATACACTAG TTTCACAAGC
  ACGCTGTACA TCATACTGTC ATACTGTAAG CAAAGTCAGT ACTACTCATG GTACAACACT
  GGACAGATCA CAGAATACCA TTTGCACAGA ATGAAAACGT CTCCCGTAGT TGGCTAGCAG
  GCCCACTCTA TAACCAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978450	NES10885407	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30724759					SNP	A	A	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978450	NES10885407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132589702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13844	CpG island 13844	1774 bp proximal
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	mRNA-UTR
Rr585476	regulatory region 585476	239 bp distal
Rr585477	regulatory region 585477	607 bp proximal
Tssr35736	transcription start site region 35736	549 bp upstream