rs30724722 SNP Detail

Summary

• ID
  rs30724722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71957468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGCCCA GCAAAAAGGA
  AGTGAGCAGG CTCGAGATCA GAAACAATAA GTATGCTCTC TCCTACTTAC CTCCCTGGGG
  TGGAGTCGTA AACCACCACC ACCCCTTCAG CACTAAAGAT TGAGCCCGGG GCTGCATGTG
  CGAGATGAGT GTTCTGCTCT ACCCTCCCCA GCACCTGCGG AACATTTTAG AAAGCTGATT
  R
  TAGAACCGCA CTCCAGGATT GAGATAAGAG TGGCCTTGGG TACACCCCGG ATATGAAATG
  AGCTTCAGAA AAGAGTATAC AGCAAGAGTC AAACCACAAG CTTAGTTCAC CCGCAGTACT
  GTGACTTAAA GCTAACTTCA CTTGAGTGTG AGGTGATGTG GGAAGTAAGT CACTGGCCCT
  CAGTCCTCCA GTGAGCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47975820	NES11901595	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30724722					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47975820	NES11901595	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71957468 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68334	predicted gene, 68334			within coordinates
Polr1a	polymerase (RNA) I polypeptide A			Intron
				mRNA-UTR
Rr632036	regulatory region 632036			within coordinates
Rr632037	regulatory region 632037			961 bp proximal